To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("seqCAT")

In most cases, you don't need to download the package archive at all.

seqCAT

DOI: 10.18129/B9.bioc.seqCAT    

This is the development version of seqCAT; for the stable release version, see seqCAT.

High Throughput Sequencing Cell Authentication Toolkit

Bioconductor version: Development (3.7)

The seqCAT package uses variant calling data (in the form of VCF files) from high throughput sequencing technologies to authenticate and validate the source, function and characteristics of biological samples used in scientific endeavours.

Author: Erik Fasterius [aut, cre]

Maintainer: Erik Fasterius <erikfas at kth.se>

Citation (from within R, enter citation("seqCAT")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("seqCAT")

Documentation

HTML R Script seqCAT: The High Throughput Sequencing Cell Authentication Toolkit
PDF   Reference Manual
Text   NEWS

Details

biocViews Coverage, GenomicVariation, Sequencing, Software, VariantAnnotation
Version 1.1.3
License MIT + file LICENCE
Depends R (>= 3.5), GenomicRanges(>= 1.26.4), VariantAnnotation(>= 1.20.3)
Imports dplyr (>= 0.5.0), GenomeInfoDb(>= 1.13.4), ggplot2 (>= 2.2.1), IRanges(>= 2.8.2), lazyeval (>= 0.2.0), scales (>= 0.4.1), S4Vectors(>= 0.12.2), stats, SummarizedExperiment(>= 1.4.0), tidyr (>= 0.6.1), utils
LinkingTo
Suggests knitr, BiocStyle, rmarkdown, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package seqCAT_1.1.3.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) seqCAT_1.1.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/seqCAT
Package Short Url http://bioconductor.org/packages/seqCAT/
Package Downloads Report Download Stats

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