KEGGandMetacoreDzPathwaysGEO

DOI: 10.18129/B9.bioc.KEGGandMetacoreDzPathwaysGEO    

This is the development version of KEGGandMetacoreDzPathwaysGEO; for the stable release version, see KEGGandMetacoreDzPathwaysGEO.

Disease Datasets from GEO

Bioconductor version: Development (3.8)

This is a collection of 18 data sets for which the phenotype is a disease with a corresponding pathway in either KEGG or metacore database.This collection of datasets were used as gold standard in comparing gene set analysis methods.

Author: Gaurav Bhatti

Maintainer: Gaurav Bhatti <gbhatti at med.wayne.edu>

Citation (from within R, enter citation("KEGGandMetacoreDzPathwaysGEO")):

Installation

To install this package, start R and enter:

if (!require("BiocManager"))
    install.packages("BiocManager")
BiocManager::install("KEGGandMetacoreDzPathwaysGEO", version = "devel")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("KEGGandMetacoreDzPathwaysGEO")

 

PDF R Script KEGGandMetacoreDzPathwaysGEO Vignette
PDF   Reference Manual

Details

biocViews ExperimentData, GEO
Version 0.115.0
License GPL-2
Depends R (>= 2.15.0)
Imports Biobase, BiocGenerics
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me GSEABenchmarkeR
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package KEGGandMetacoreDzPathwaysGEO_0.115.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/KEGGandMetacoreDzPathwaysGEO
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/KEGGandMetacoreDzPathwaysGEO
Package Short Url http://bioconductor.org/packages/KEGGandMetacoreDzPathwaysGEO/
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