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curatedOvarianData

This is the development version of curatedOvarianData; for the stable release version, see curatedOvarianData.

Clinically Annotated Data for the Ovarian Cancer Transcriptome


Bioconductor version: Development (3.19)

The curatedOvarianData package provides data for gene expression analysis in patients with ovarian cancer.

Author: Benjamin F. Ganzfried, Markus Riester, Steve Skates, Victoria Wang, Thomas Risch, Benjamin Haibe-Kains, Svitlana Tyekucheva, Jie Ding, Ina Jazic, Michael Birrer, Giovanni Parmigiani, Curtis Huttenhower, Levi Waldron

Maintainer: Levi Waldron <lwaldron.research at gmail.com>

Citation (from within R, enter citation("curatedOvarianData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("curatedOvarianData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("curatedOvarianData")
curatedOvarianData_vignette.pdf PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews CancerData, ExperimentData, MicroarrayData, OvarianCancerData, RNASeqData
Version 1.41.1
License Artistic-2.0
Depends R (>= 3.0.0), Biobase
Imports BiocGenerics
System Requirements
URL http://bcb.dfci.harvard.edu/ovariancancer
See More
Suggests survival, RUnit, metafor, genefilter, logging, sva, xtable, futile.logger, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me doppelgangR, TOP
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package curatedOvarianData_1.41.1.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/curatedOvarianData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/curatedOvarianData
Package Short Url https://bioconductor.org/packages/curatedOvarianData/
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