To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("CNTools")

In most cases, you don't need to download the package archive at all.

CNTools

 

Convert segment data into a region by sample matrix to allow for other high level computational analyses.

Bioconductor version: Release (3.1)

This package provides tools to convert the output of segmentation analysis using DNAcopy to a matrix structure with overlapping segments as rows and samples as columns so that other computational analyses can be applied to segmented data

Author: Jianhua Zhang

Maintainer: J. Zhang <jzhang at jimmy.harvard.edu>

Citation (from within R, enter citation("CNTools")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("CNTools")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNTools")

 

PDF R Script NCTools HowTo
PDF   Reference Manual

Details

biocViews CopyNumberVariation, Microarray, Software
Version 1.24.0
In Bioconductor since BioC 2.5 (R-2.10) (6 years)
License LGPL
Depends R (>= 2.10), methods, tools, stats, genefilter
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me cghMCR
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source CNTools_1.24.0.tar.gz
Windows Binary CNTools_1.24.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) CNTools_1.24.0.tgz
Mac OS X 10.9 (Mavericks) CNTools_1.24.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/CNTools/tree/release-3.1
Package Short Url http://bioconductor.org/packages/CNTools/
Package Downloads Report Download Stats

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