CNTools

DOI: 10.18129/B9.bioc.CNTools    

Convert segment data into a region by sample matrix to allow for other high level computational analyses.

Bioconductor version: Release (3.7)

This package provides tools to convert the output of segmentation analysis using DNAcopy to a matrix structure with overlapping segments as rows and samples as columns so that other computational analyses can be applied to segmented data

Author: Jianhua Zhang

Maintainer: J. Zhang <jzhang at jimmy.harvard.edu>

Citation (from within R, enter citation("CNTools")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CNTools")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNTools")

 

PDF R Script NCTools HowTo
PDF   Reference Manual

Details

biocViews CopyNumberVariation, Microarray, Software
Version 1.36.0
In Bioconductor since BioC 2.5 (R-2.10) (9 years)
License LGPL
Depends R (>= 2.10), methods, tools, stats, genefilter
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me cghMCR
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CNTools_1.36.0.tar.gz
Windows Binary CNTools_1.36.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) CNTools_1.36.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CNTools
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CNTools
Package Short Url http://bioconductor.org/packages/CNTools/
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