GWAS.BAYES

DOI: 10.18129/B9.bioc.GWAS.BAYES    

GWAS for Selfing Species

Bioconductor version: Release (3.12)

This package is built to perform GWAS analysis for selfing species. The research related to this package was supported in part by National Science Foundation Award 1853549.

Author: Jake Williams [aut, cre], Marco Ferreira [aut], Tieming Ji [aut]

Maintainer: Jake Williams <jwilliams at vt.edu>

Citation (from within R, enter citation("GWAS.BAYES")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GWAS.BAYES")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GWAS.BAYES")

 

HTML R Script GWAS.BAYES
PDF   Reference Manual
Text   LICENSE

Details

biocViews AssayDomain, SNP, Software
Version 1.0.0
In Bioconductor since BioC 3.12 (R-4.0) (< 6 months)
License GPL-2 | GPL-3
Depends R (>= 4.0), Rcpp (>= 1.0.3), RcppEigen (>= 0.3.3.7.0), GA (>= 3.2), caret (>= 6.0-86), ggplot2 (>= 3.3.0), doParallel (>= 1.0.15), memoise (>= 1.1.0), reshape2 (>= 1.4.4), Matrix (>= 1.2-18)
Imports
LinkingTo RcppEigen (>= 0.3.3.7.0), Rcpp (>= 1.0.3)
Suggests BiocStyle, knitr, rmarkdown, formatR, rrBLUP, qqman
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GWAS.BAYES_1.0.0.tar.gz
Windows Binary GWAS.BAYES_1.0.0.zip
macOS 10.13 (High Sierra) GWAS.BAYES_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GWAS.BAYES
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GWAS.BAYES
Package Short Url https://bioconductor.org/packages/GWAS.BAYES/
Package Downloads Report Download Stats

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