customCMPdb

DOI: 10.18129/B9.bioc.customCMPdb    

Customize and Query Compound Annotation Database

Bioconductor version: Release (3.12)

This package serves as a query interface for important community collections of small molecules, while also allowing users to include custom compound collections.

Author: Yuzhu Duan [aut, cre], Thomas Girke [aut]

Maintainer: Yuzhu Duan <yduan004 at ucr.edu>

Citation (from within R, enter citation("customCMPdb")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("customCMPdb")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("customCMPdb")

 

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Details

biocViews Cheminformatics, Software
Version 1.0.0
In Bioconductor since BioC 3.12 (R-4.0) (< 6 months)
License Artistic-2.0
Depends R (>= 4.0)
Imports AnnotationHub, RSQLite, XML, utils, ChemmineR, methods, stats, rappdirs, BiocFileCache
LinkingTo
Suggests knitr, rmarkdown, testthat, BiocStyle
SystemRequirements
Enhances
URL https://github.com/yduan004/customCMPdb/
BugReports https://github.com/yduan004/customCMPdb/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package customCMPdb_1.0.0.tar.gz
Windows Binary customCMPdb_1.0.0.zip
macOS 10.13 (High Sierra) customCMPdb_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/customCMPdb
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/customCMPdb
Package Short Url https://bioconductor.org/packages/customCMPdb/
Package Downloads Report Download Stats

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