eds

DOI: 10.18129/B9.bioc.eds    

eds: Low-level reader for Alevin EDS format

Bioconductor version: Release (3.16)

This packages provides a single function, readEDS. This is a low-level utility for reading in Alevin EDS format into R. This function is not designed for end-users but instead the package is predominantly for simplifying package dependency graph for other Bioconductor packages.

Author: Avi Srivastava [aut, cre], Michael Love [aut, ctb]

Maintainer: Avi Srivastava <asrivastava at cs.stonybrook.edu>

Citation (from within R, enter citation("eds")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("eds")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("eds")

 

HTML R Script eds: Low-level reader function for Alevin EDS format
PDF   Reference Manual
Text   NEWS

Details

biocViews GeneExpression, RNASeq, Sequencing, SingleCell, Software
Version 1.0.0
In Bioconductor since BioC 3.16 (R-4.2) (< 6 months)
License GPL-2
Depends Matrix
Imports Rcpp
LinkingTo Rcpp
Suggests knitr, tximportData, testthat (>= 3.0.0)
SystemRequirements C++11
Enhances
URL https://github.com/mikelove/eds
Depends On Me
Imports Me
Suggests Me tximport
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package eds_1.0.0.tar.gz
Windows Binary eds_1.0.0.zip (64-bit only)
macOS Binary (x86_64) eds_1.0.0.tgz
macOS Binary (arm64) eds_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/eds
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/eds
Package Short Url https://bioconductor.org/packages/eds/
Package Downloads Report Download Stats

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