To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ibh")

In most cases, you don't need to download the package archive at all.

ibh

Interaction Based Homogeneity for Evaluating Gene Lists

Bioconductor version: Release (2.14)

This package contains methods for calculating Interaction Based Homogeneity to evaluate fitness of gene lists to an interaction network which is useful for evaluation of clustering results and gene list analysis. BioGRID interactions are used in the calculation. The user can also provide their own interactions.

Author: Kircicegi Korkmaz, Volkan Atalay, Rengul Cetin Atalay.

Maintainer: Kircicegi Korkmaz <e102771 at ceng.metu.edu.tr>

Citation (from within R, enter citation("ibh")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ibh")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ibh")

 

PDF R Script ibh
PDF   Reference Manual

Details

biocViews DataImport, GraphAndNetwork, NetworkEnrichment, QualityControl, Software
Version 1.12.0
In Bioconductor since BioC 2.8 (R-2.13)
License GPL (>= 2)
Depends simpIntLists
Imports
Suggests yeastCC, stats
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ibh_1.12.0.tar.gz
Windows Binary ibh_1.12.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) ibh_1.12.0.tgz
Mac OS X 10.9 (Mavericks) ibh_1.12.0.tgz
Browse/checkout source (username/password: readonly)
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