To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("LungCancerLines")

In most cases, you don't need to download the package archive at all.

LungCancerLines

Reads from Two Lung Cancer Cell Lines

Bioconductor version: Release (3.0)

Reads from an RNA-seq experiment between two lung cancer cell lines: H1993 (met) and H2073 (primary). The reads are stored as Fastq files and are meant for use with the TP53Genome object in the gmapR package.

Author: Cory Barr, Michael Lawrence

Maintainer: Cory Barr <barr.cory at gene.com>

Citation (from within R, enter citation("LungCancerLines")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("LungCancerLines")

Documentation

PDF   Reference Manual

Details

biocViews ExperimentData
Version 0.3.1
License Artistic-2.0
Depends
Imports Rsamtools
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me gmapR, HTSeqGenie, VariantTools

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source LungCancerLines_0.3.1.tar.gz
Windows Binary LungCancerLines_0.3.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) LungCancerLines_0.3.1.tgz
Mac OS X 10.9 (Mavericks) LungCancerLines_0.3.1.tgz
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Fred Hutchinson Cancer Research Center