To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("gageData")

In most cases, you don't need to download the package archive at all.

gageData

Auxillary data for gage package

Bioconductor version: Release (2.14)

This is a supportive data package for the software package, gage. However, the data supplied here are also useful for gene set or pathway analysis or microarray data analysis in general. In this package, we provide two demo microarray dataset: GSE16873 (a breast cancer dataset from GEO) and BMP6 (originally published as an demo dataset for GAGE, also registered as GSE13604 in GEO). This package also includes commonly used gene set data based on KEGG pathways and GO terms for major research species, including human, mouse, rat and budding yeast. Mapping data between common gene IDs for budding yeast are also included.

Author: Weijun Luo

Maintainer: Weijun Luo <luo_weijun at yahoo.com>

Citation (from within R, enter citation("gageData")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("gageData")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gageData")

 

PDF   Reference Manual
Text   NEWS

Details

biocViews Cancer, ExperimentData
Version 2.2.0
License GPL (>=2.0)
Depends R (>= 2.10)
Imports
Suggests gage, pathview, genefilter
System Requirements
URL
Depends On Me
Imports Me
Suggests Me gage

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source gageData_2.2.0.tar.gz
Windows Binary gageData_2.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) gageData_2.2.0.tgz
Mac OS X 10.9 (Mavericks) gageData_2.2.0.tgz
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