Developer Day 2014

Developer Day is part of the Bioconductor annual conference; Developer Day is on July 30,

1. This page is under active development, and will be until July 30!

A Google doc for public notes is available.

Tentative schedule

9:00 - 12:00 Morning

• 9:00 - 9:45: Welcome; Project Status and Updates. Martin Morgan, Valerie Obenchain, Sonali Arora, Dan Tenebaum, Nate Hayden, Hervé Pagès, Marc Carlson.

• 9:45 - 10:15: Group Activity

• 10:15 - 10:45: Break

• 10:45 - 12:00: Flashlight Presentations (the following are not necessarily in the order of presentation).

  • Di Wu. Rank-based Rotation Gene Set Enrichment Analysis (ROMER), accounting for genewise correlation and dealing with complex designs.
  • Ying Shen. ASSIGN: Context-specific and Integrative Genomic Profiling of Heterogeneous Biological Pathways.
  • Mark Adams. mygene.R: An R package to access MyGene.
  • Michael Love. Shiny clickable plots.
  • Stephanie Hicks. When to use quantile normalization?
  • Leonardo Rodrigues. LAT, streamlining lipid data analysis in R.
  • Robert Castelo. Integrated variant annotation and filtering using R/Bioconductor and the VariantFiltering package.
  • Jianhong Ou. motifStack for graphic representation of multiple motifs in one canvas.
  • Laurent Gatto. Makefile for R packages: maker.
  • Houtan Noushmehr. Bioconductor in Latin America: LAb.

12:00 - 1:00 Lunch

1:00 - 5:00 Afternoon

• 1:00 - 1:30: Community Needs

• 1:30 - 2:45: Developer Workshops (ad hoc)

• 2:45 - 3:15: Break

• 3:15 - 4:30: Developer Workshops (ad hoc)

• 4:30 - 5:00: Developer Day Address: George Ostrouchov