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This is the development version of AnVILPublish; for the stable release version, see AnVILPublish.

Publish Packages and Other Resources to AnVIL Workspaces

Bioconductor version: Development (3.20)

Use this package to create or update AnVIL workspaces from resources such as R / Bioconductor packages. The metadata about the package (e.g., select information from the package DESCRIPTION file and from vignette YAML headings) are used to populate the 'DASHBOARD'. Vignettes are translated to python notebooks ready for evaluation in AnVIL.

Author: Marcel Ramos [aut, cre] , Martin Morgan [aut] , Kayla Interdonato [aut], Vincent Carey [ctb]

Maintainer: Marcel Ramos <marcel.ramos at>

Citation (from within R, enter citation("AnVILPublish")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Publishing R / Bioconductor packages to AnVIL Workspaces HTML R Script
Reference Manual PDF


biocViews Infrastructure, Software
Version 1.15.0
In Bioconductor since BioC 3.12 (R-4.0) (3.5 years)
License Artistic-2.0
Imports AnVIL, BiocBaseUtils, BiocManager, httr, jsonlite, rmarkdown, yaml, readr, whisker, tools, utils, stats
System Requirements
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Suggests knitr, BiocStyle, testthat (>= 3.0.0)
Linking To
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package AnVILPublish_1.15.0.tar.gz
Windows Binary
macOS Binary (x86_64) AnVILPublish_1.15.0.tgz
macOS Binary (arm64) AnVILPublish_1.15.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
Bioc Package Browser
Package Short Url
Package Downloads Report Download Stats