CAFE
Chromosmal Aberrations Finder in Expression data
Bioconductor version: 3.24 · Package version: 1.49.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Detection and visualizations of gross chromosomal aberrations using Affymetrix expression microarrays as input
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CAFE")Details
| Maintainer | Sander Bollen <sander.h.bollen@gmail.com> |
| Author | Sander Bollen |
| License | GPL-3 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | GeneExpression, GeneSetEnrichment, Microarray, OneChannel, Software |
| Package Short Url | https://bioconductor.org/packages/CAFE/ |
Citation
From within R, enter citation("CAFE"):
Sander Bollen. CAFE: Chromosmal Aberrations Finder in Expression data. doi:10.18129/B9.bioc.CAFE, R package version 1.49.0, https://bioconductor.org/packages/CAFE.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | CAFE_1.49.0.tar.gz |
| Windows binary (x86_64) | CAFE_1.49.0.zip |
| macOS binary (arm64) | CAFE_1.49.0.tgz |
| macOS binary (x86_64) | CAFE_1.49.0.tgz |
Dependencies
Depends: R (>= 2.10), biovizBase, GenomicRanges, IRanges, ggbio
Imports: affy, ggplot2, annotate, grid, gridExtra, tcltk, Biobase
Suggests: RUnit, BiocGenerics, BiocStyle