DOI: 10.18129/B9.bioc.CAFE    

This is the development version of CAFE; for the stable release version, see CAFE.

Chromosmal Aberrations Finder in Expression data

Bioconductor version: Development (3.9)

Detection and visualizations of gross chromosomal aberrations using Affymetrix expression microarrays as input

Author: Sander Bollen

Maintainer: Sander Bollen <sander.h.bollen at>

Citation (from within R, enter citation("CAFE")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("CAFE", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



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biocViews GeneExpression, GeneSetEnrichment, Microarray, OneChannel, Software
Version 1.19.0
In Bioconductor since BioC 2.14 (R-3.1) (5 years)
License GPL-3
Depends R (>= 2.10), biovizBase, GenomicRanges, IRanges, ggbio
Imports affy, ggplot2, annotate, grid, gridExtra, tcltk, Biobase
Suggests RUnit, BiocGenerics, BiocStyle
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

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Follow Installation instructions to use this package in your R session.

Source Package CAFE_1.19.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.11 (El Capitan) CAFE_1.19.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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