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Category

This is the development version of Category; for the stable release version, see Category.

Category Analysis


Bioconductor version: Development (3.20)

A collection of tools for performing category (gene set enrichment) analysis.

Author: Robert Gentleman [aut], Seth Falcon [ctb], Deepayan Sarkar [ctb], Robert Castelo [ctb], Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("Category")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("Category")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Category")
Using Categories to Analyze Microarray Data PDF R Script
Using Chromosome Bands as Categories PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Annotation, GO, GeneSetEnrichment, Pathways, Software
Version 2.71.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 19 years)
License Artistic-2.0
Depends methods, stats4, BiocGenerics, AnnotationDbi, Biobase, Matrix
Imports utils, stats, graph, RBGL, GSEABase, genefilter, annotate, DBI
System Requirements
URL
See More
Suggests EBarrays, ALL, Rgraphviz, RColorBrewer, xtable (>= 1.4-6), hgu95av2.db, KEGGREST, karyoploteR, geneplotter, limma, lattice, RUnit, org.Sc.sgd.db, GOstats, GO.db
Linking To
Enhances
Depends On Me GOstats
Imports Me categoryCompare, GmicR, interactiveDisplay, meshr, miRLAB, phenoTest, scTensor
Suggests Me qpgraph, RnBeads, maGUI
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Category_2.71.0.tar.gz
Windows Binary Category_2.71.0.zip
macOS Binary (x86_64) Category_2.71.0.tgz
macOS Binary (arm64) Category_2.71.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Category
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Category
Bioc Package Browser https://code.bioconductor.org/browse/Category/
Package Short Url https://bioconductor.org/packages/Category/
Package Downloads Report Download Stats