ENmix

DOI: 10.18129/B9.bioc.ENmix    

This is the development version of ENmix; for the stable release version, see ENmix.

Quality control and analysis tools for Illumina DNA methylation BeadChip

Bioconductor version: Development (3.13)

Tool kits for quanlity control, analysis and visulization of Illumina DNA methylation arrays.

Author: Zongli Xu [cre, aut], Liang Niu [aut], Jack Taylor [ctb]

Maintainer: Zongli Xu <xuz at niehs.nih.gov>

Citation (from within R, enter citation("ENmix")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ENmix")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ENmix")

 

PDF R Script ENmix User's Guide
PDF   Reference Manual
Text   NEWS

Details

biocViews BatchEffect, DNAMethylation, DataImport, DifferentialMethylation, Epigenetics, ImmunoOncology, MethylationArray, Microarray, MultiChannel, Normalization, OneChannel, Preprocessing, PrincipalComponent, QualityControl, Regression, Software, TwoChannel
Version 1.27.3
In Bioconductor since BioC 3.1 (R-3.2) (5.5 years)
License Artistic-2.0
Depends parallel, doParallel, foreach, SummarizedExperiment, stats
Imports grDevices, graphics, preprocessCore, matrixStats, methods, utils, irr, geneplotter, impute, minfi, RPMM, illuminaio, dynamicTreeCut, IRanges, Biobase, ExperimentHub, AnnotationHub, genefilter, gplots, quadprog, S4Vectors, sva, wateRmelon
LinkingTo
Suggests minfiData, RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ENmix_1.27.3.tar.gz
Windows Binary ENmix_1.27.3.zip
macOS 10.13 (High Sierra) ENmix_1.27.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/ENmix
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ENmix
Package Short Url https://bioconductor.org/packages/ENmix/
Package Downloads Report Download Stats

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