DOI: 10.18129/B9.bioc.ExiMiR    

This is the development version of ExiMiR; for the stable release version, see ExiMiR.

R functions for the normalization of Exiqon miRNA array data

Bioconductor version: Development (3.9)

This package contains functions for reading raw data in ImaGene TXT format obtained from Exiqon miRCURY LNA arrays, annotating them with appropriate GAL files, and normalizing them using a spike-in probe-based method. Other platforms and data formats are also supported.

Author: Sylvain Gubian <DL.RSupport at pmi.com>, Alain Sewer <DL.RSupport at pmi.com>, PMP SA

Maintainer: Sylvain Gubian <DL.RSupport at pmi.com>

Citation (from within R, enter citation("ExiMiR")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("ExiMiR", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script Description of ExiMiR
PDF   Reference Manual
Text   NEWS


biocViews GeneExpression, Microarray, OneChannel, Preprocessing, Software, Transcription, TwoChannel
Version 2.25.0
In Bioconductor since BioC 2.8 (R-2.13) (8 years)
License GPL-2
Depends R (>= 2.10), Biobase(>= 2.5.5), affy(>= 1.26.1), limma
Imports affyio(>= 1.13.3), Biobase(>= 2.5.5), preprocessCore(>= 1.10.0)
Suggests mirna10cdf
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

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Follow Installation instructions to use this package in your R session.

Source Package ExiMiR_2.25.0.tar.gz
Windows Binary ExiMiR_2.25.0.zip
Mac OS X 10.11 (El Capitan) ExiMiR_2.25.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ExiMiR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ExiMiR
Package Short Url http://bioconductor.org/packages/ExiMiR/
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