GA4GHclient
A Bioconductor package for accessing GA4GH API data servers
Bioconductor version: 3.24 · Package version: 1.37.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
GA4GHclient provides an easy way to access public data servers through Global Alliance for Genomics and Health (GA4GH) genomics API. It provides low-level access to GA4GH API and translates response data into Bioconductor-based class objects.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GA4GHclient")Details
| Maintainer | Welliton Souza <well309@gmail.com> |
| Author | Welliton Souza [aut, cre], Benilton Carvalho [ctb], Cristiane Rocha [ctb] |
| License | GPL (>= 2) |
| URL | https://github.com/labbcb/GA4GHclient |
| Bug Reports | https://github.com/labbcb/GA4GHclient/issues |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataRepresentation, Software, ThirdPartyClient |
| Package Short Url | https://bioconductor.org/packages/GA4GHclient/ |
Citation
From within R, enter citation("GA4GHclient"):
Welliton Souza. GA4GHclient: A Bioconductor package for accessing GA4GH API data servers. doi:10.18129/B9.bioc.GA4GHclient, R package version 1.37.0, https://bioconductor.org/packages/GA4GHclient.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | GA4GHclient_1.37.0.tar.gz |
| macOS binary (arm64) | GA4GHclient_1.37.0.tgz |
| macOS binary (x86_64) | GA4GHclient_1.37.0.tgz |
Dependencies
Depends: R (>= 3.5.0), S4Vectors
Imports: BiocGenerics, Biostrings, dplyr, Seqinfo, GenomicRanges, httr, IRanges, jsonlite, methods, VariantAnnotation
Suggests: GenomeInfoDb, AnnotationDbi, BiocStyle, DT, knitr, org.Hs.eg.db, rmarkdown, testthat, TxDb.Hsapiens.UCSC.hg19.knownGene
Reverse dependencies
Depends On Me (1): GA4GHshiny