DOI: 10.18129/B9.bioc.GA4GHshiny    

This is the development version of GA4GHshiny; for the stable release version, see GA4GHshiny.

Shiny application for interacting with GA4GH-based data servers

Bioconductor version: Development (3.9)

GA4GHshiny package provides an easy way to interact with data servers based on Global Alliance for Genomics and Health (GA4GH) genomics API through a Shiny application. It also integrates with Beacon Network.

Author: Welliton Souza [aut, cre], Benilton Carvalho [ctb], Cristiane Rocha [ctb], Elizabeth Borgognoni [ctb]

Maintainer: Welliton Souza <well309 at>

Citation (from within R, enter citation("GA4GHshiny")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("GA4GHshiny", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script GA4GHshiny
PDF   Reference Manual


biocViews GUI, Software
Version 1.5.0
In Bioconductor since BioC 3.6 (R-3.4) (1.5 years)
License GPL-3
Depends GA4GHclient
Imports AnnotationDbi, BiocGenerics, dplyr, DT, GenomeInfoDb, openxlsx, GenomicFeatures, methods, purrr, S4Vectors, shiny, shinyjs, tidyr, shinythemes
Suggests BiocStyle,, knitr, rmarkdown, testthat, TxDb.Hsapiens.UCSC.hg19.knownGene
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

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Follow Installation instructions to use this package in your R session.

Source Package GA4GHshiny_1.5.0.tar.gz
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Mac OS X 10.11 (El Capitan) GA4GHshiny_1.5.0.tgz
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