GSReg
This is the development version of GSReg; for the stable release version, see GSReg.
Gene Set Regulation (GS-Reg)
Bioconductor version: Development (3.20)
A package for gene set analysis based on the variability of expressions as well as a method to detect Alternative Splicing Events . It implements DIfferential RAnk Conservation (DIRAC) and gene set Expression Variation Analysis (EVA) methods. For detecting Differentially Spliced genes, it provides an implementation of the Spliced-EVA (SEVA).
Author: Bahman Afsari <bahman at jhu.edu>, Elana J. Fertig <ejfertig at jhmi.edu>
Maintainer: Bahman Afsari <bahman at jhu.edu>, Elana J. Fertig <ejfertig at jhmi.edu>
citation("GSReg")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("GSReg")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GSReg")
Working with the GSReg package | R Script | |
Reference Manual |
Details
biocViews | AlternativeSplicing, GeneExpression, GeneRegulation, GeneSetEnrichment, GeneticVariability, Pathways, Software |
Version | 1.39.0 |
In Bioconductor since | BioC 3.0 (R-3.1) (10 years) |
License | GPL-2 |
Depends | R (>= 2.13.1), Homo.sapiens, org.Hs.eg.db, GenomicFeatures, AnnotationDbi |
Imports | |
System Requirements | |
URL |
See More
Suggests | GenomicRanges, GSBenchMark |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | GSReg_1.39.0.tar.gz |
Windows Binary | GSReg_1.39.0.zip (64-bit only) |
macOS Binary (x86_64) | GSReg_1.39.0.tgz |
macOS Binary (arm64) | GSReg_1.39.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/GSReg |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GSReg |
Bioc Package Browser | https://code.bioconductor.org/browse/GSReg/ |
Package Short Url | https://bioconductor.org/packages/GSReg/ |
Package Downloads Report | Download Stats |