PAIRADISE

DOI: 10.18129/B9.bioc.PAIRADISE    

This is the development version of PAIRADISE; to use it, please install the devel version of Bioconductor.

PAIRADISE: Paired analysis of differential isoform expression

Bioconductor version: Development (3.9)

This package implements the PAIRADISE procedure for detecting differential isoform expression between matched replicates in paired RNA-Seq data.

Author: Levon Demirdjian, Shihao Shen, Ying Nian Wu, Yi Xing

Maintainer: Qiang Hu <Qiang.Hu at roswellpark.org>, Levon Demirdjian <levondem at ucla.edu>

Citation (from within R, enter citation("PAIRADISE")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("PAIRADISE", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PAIRADISE")

 

HTML R Script PAIRADISE
PDF   Reference Manual
Text   LICENSE

Details

biocViews AlternativeSplicing, DifferentialExpression, ImmunoOncology, RNASeq, Software, StatisticalMethod
Version 0.99.6
In Bioconductor since BioC 3.9 (R-3.6)
License MIT + file LICENSE
Depends R (>= 3.6), nloptr
Imports SummarizedExperiment, S4Vectors, stats, methods, abind, BiocParallel
LinkingTo
Suggests testthat, knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PAIRADISE_0.99.6.tar.gz
Windows Binary PAIRADISE_0.99.6.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) PAIRADISE_0.99.6.tgz
Source Repository git clone https://git.bioconductor.org/packages/PAIRADISE
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PAIRADISE
Package Short Url http://bioconductor.org/packages/PAIRADISE/
Package Downloads Report Download Stats

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