Registration Open for Bioc2024

RNAinteract

This is the development version of RNAinteract; for the stable release version, see RNAinteract.

Estimate Pairwise Interactions from multidimensional features


Bioconductor version: Development (3.20)

RNAinteract estimates genetic interactions from multi-dimensional read-outs like features extracted from images. The screen is assumed to be performed in multi-well plates or similar designs. Starting from a list of features (e.g. cell number, area, fluorescence intensity) per well, genetic interactions are estimated. The packages provides functions for reporting interacting gene pairs, plotting heatmaps and double RNAi plots. An HTML report can be written for quality control and analysis.

Author: Bernd Fischer [aut], Wolfgang Huber [ctb], Mike Smith [cre]

Maintainer: Mike Smith <mike.smith at embl.de>

Citation (from within R, enter citation("RNAinteract")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("RNAinteract")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews CellBasedAssays, ImmunoOncology, Preprocessing, QualityControl, Software, Visualization
Version 1.53.0
In Bioconductor since BioC 2.8 (R-2.13) (13 years)
License Artistic-2.0
Depends R (>= 2.12.0)
Imports RColorBrewer, ICS, ICSNP, cellHTS2, geneplotter, gplots, grid, hwriter, lattice, latticeExtra, limma, methods, splots(>= 1.13.12), abind, locfit, Biobase
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me RNAinteractMAPK
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/RNAinteract
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RNAinteract
Package Short Url https://bioconductor.org/packages/RNAinteract/
Package Downloads Report Download Stats