DOI: 10.18129/B9.bioc.altcdfenvs    

This is the development version of altcdfenvs; for the stable release version, see altcdfenvs.

alternative CDF environments (aka probeset mappings)

Bioconductor version: Development (3.9)

Convenience data structures and functions to handle cdfenvs

Author: Laurent Gautier <lgautier at>

Maintainer: Laurent Gautier <lgautier at>

Citation (from within R, enter citation("altcdfenvs")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("altcdfenvs", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script altcdfenvs
PDF R Script Alternative CDF environments for 2(or more)-genomes chips
PDF R Script Modifying existing CDF environments to make alternative CDF environments
PDF   Reference Manual


biocViews Annotation, Microarray, OneChannel, Preprocessing, ProprietaryPlatforms, QualityControl, Software, Transcription
Version 2.45.1
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 14 years)
License GPL (>= 2)
Depends R (>= 2.7), methods, BiocGenerics(>= 0.1.0), S4Vectors(>= 0.9.25), Biobase(>= 2.15.1), affy, makecdfenv, Biostrings, hypergraph
Suggests plasmodiumanophelescdf, hgu95acdf, hgu133aprobe, hgu133a.db, hgu133acdf, Rgraphviz, RColorBrewer
Depends On Me
Imports Me Harshlight
Suggests Me
Links To Me
Build Report  

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Follow Installation instructions to use this package in your R session.

Source Package altcdfenvs_2.45.1.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) altcdfenvs_2.45.1.tgz
Source Repository git clone
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