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altcdfenvs

This is the development version of altcdfenvs; for the stable release version, see altcdfenvs.

alternative CDF environments (aka probeset mappings)


Bioconductor version: Development (3.19)

Convenience data structures and functions to handle cdfenvs

Author: Laurent Gautier <lgautier at gmail.com>

Maintainer: Laurent Gautier <lgautier at gmail.com>

Citation (from within R, enter citation("altcdfenvs")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("altcdfenvs")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("altcdfenvs")
altcdfenvs PDF R Script
Alternative CDF environments for 2(or more)-genomes chips PDF R Script
Modifying existing CDF environments to make alternative CDF environments PDF R Script
Reference Manual PDF

Details

biocViews Annotation, Microarray, OneChannel, Preprocessing, ProprietaryPlatforms, QualityControl, Software, Transcription
Version 2.65.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 19 years)
License GPL (>= 2)
Depends R (>= 2.7), methods, BiocGenerics(>= 0.1.0), S4Vectors(>= 0.9.25), Biobase(>= 2.15.1), affy, makecdfenv, Biostrings, hypergraph
Imports
System Requirements
URL
See More
Suggests plasmodiumanophelescdf, hgu95acdf, hgu133aprobe, hgu133a.db, hgu133acdf, Rgraphviz, RColorBrewer
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package altcdfenvs_2.65.0.tar.gz
Windows Binary altcdfenvs_2.65.0.zip
macOS Binary (x86_64) altcdfenvs_2.65.0.tgz
macOS Binary (arm64) altcdfenvs_2.65.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/altcdfenvs
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/altcdfenvs
Bioc Package Browser https://code.bioconductor.org/browse/altcdfenvs/
Package Short Url https://bioconductor.org/packages/altcdfenvs/
Package Downloads Report Download Stats