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This is the development version of makecdfenv; for the stable release version, see makecdfenv.

CDF Environment Maker

Bioconductor version: Development (3.19)

This package has two functions. One reads a Affymetrix chip description file (CDF) and creates a hash table environment containing the location/probe set membership mapping. The other creates a package that automatically loads that environment.

Author: Rafael A. Irizarry <rafa at jhu.edu>, Laurent Gautier <laurent at cbs.dtu.dk>, Wolfgang Huber <w.huber at dkfz-heidelberg.de>, Ben Bolstad <bmb at bmbolstad.com>

Maintainer: James W. MacDonald <jmacdon at u.washington.edu>

Citation (from within R, enter citation("makecdfenv")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

makecdfenv primer PDF R Script
Reference Manual PDF


biocViews DataImport, OneChannel, Preprocessing, Software
Version 1.79.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 19 years)
License GPL (>= 2)
Depends R (>= 2.6.0), affyio
Imports Biobase, affy, methods, stats, utils, zlibbioc
System Requirements
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Linking To
Depends On Me altcdfenvs
Imports Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package makecdfenv_1.79.0.tar.gz
Windows Binary makecdfenv_1.79.0.zip
macOS Binary (x86_64) makecdfenv_1.79.0.tgz
macOS Binary (arm64) makecdfenv_1.79.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/makecdfenv
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/makecdfenv
Bioc Package Browser https://code.bioconductor.org/browse/makecdfenv/
Package Short Url https://bioconductor.org/packages/makecdfenv/
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