flowClust

DOI: 10.18129/B9.bioc.flowClust    

This is the development version of flowClust; to use it, please install the devel version of Bioconductor.

Clustering for Flow Cytometry

Bioconductor version: Development (3.10)

Robust model-based clustering using a t-mixture model with Box-Cox transformation. Note: users should have GSL installed. Windows users: 'consult the README file available in the inst directory of the source distribution for necessary configuration instructions'.

Author: Raphael Gottardo <raph at stat.ubc.ca>, Kenneth Lo <c.lo at stat.ubc.ca>, Greg Finak <gfinak at fhcrc.org>

Maintainer: Greg Finak <gfinak at fhcrc.org>, Mike Jiang <wjiang2 at fhcrc.org>

Citation (from within R, enter citation("flowClust")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("flowClust")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowClust")

 

HTML R Script Robust Model-based Clustering of Flow Cytometry Data\\ The flowClust package
PDF   Reference Manual
Text   README
Text   NEWS

Details

biocViews Clustering, FlowCytometry, ImmunoOncology, Software, Visualization
Version 3.23.0
In Bioconductor since BioC 2.2 (R-2.7) (11 years)
License Artistic-2.0
Depends R (>= 2.5.0)
Imports BiocGenerics, methods, Biobase, graph, ellipse, flowViz, flowCore, clue, corpcor, mnormt, parallel
LinkingTo
Suggests testthat, flowWorkspace, flowWorkspaceData, knitr, rmarkdown, openCyto
SystemRequirements GNU make
Enhances
URL
Depends On Me flowMerge, flowTrans
Imports Me CONFESS, flowTrans, flowType, openCyto
Suggests Me BiocGenerics
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowClust_3.23.0.tar.gz
Windows Binary flowClust_3.23.0.zip
Mac OS X 10.11 (El Capitan) flowClust_3.23.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/flowClust
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowClust
Package Short Url http://bioconductor.org/packages/flowClust/
Package Downloads Report Download Stats

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