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This is the development version of flowCut; for the stable release version, see flowCut.

Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence Analysis

Bioconductor version: Development (3.20)

Common techinical complications such as clogging can result in spurious events and fluorescence intensity shifting, flowCut is designed to detect and remove technical artifacts from your data by removing segments that show statistical differences from other segments.

Author: Justin Meskas [cre, aut], Sherrie Wang [aut]

Maintainer: Justin Meskas <justinmeskas at>

Citation (from within R, enter citation("flowCut")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

_**flowCut**_: Precise and Accurate Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence Analysis HTML R Script
Reference Manual PDF


biocViews CellBasedAssays, FlowCytometry, Preprocessing, QualityControl, Software
Version 1.15.0
In Bioconductor since BioC 3.12 (R-4.0) (3.5 years)
License Artistic-2.0
Depends R (>= 3.4), flowCore
Imports flowDensity(>= 1.13.1), Cairo, e1071, grDevices, graphics, stats, methods
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Suggests RUnit, BiocGenerics, knitr, markdown, rmarkdown
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Follow Installation instructions to use this package in your R session.

Source Package flowCut_1.15.0.tar.gz
Windows Binary (64-bit only)
macOS Binary (x86_64) flowCut_1.15.0.tgz
macOS Binary (arm64) flowCut_1.15.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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