glmGamPoi
Fit a Gamma-Poisson Generalized Linear Model
Bioconductor version: 3.24 · Package version: 1.25.1
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Fit linear models to overdispersed count data. The package can estimate the overdispersion and fit repeated models for matrix input. It is designed to handle large input datasets as they typically occur in single cell RNA-seq experiments.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("glmGamPoi")Details
| Maintainer | Constantin Ahlmann-Eltze <artjom31415@googlemail.com> |
| Author | Constantin Ahlmann-Eltze [aut, cre] (ORCID: <https://orcid.org/0000-0002-3762-068X>), Nathan Lubock [ctb] (ORCID: <https://orcid.org/0000-0001-8064-2465>), Michael Love [ctb] |
| License | MIT + file LICENSE |
| URL | https://github.com/const-ae/glmGamPoi |
| Bug Reports | https://github.com/const-ae/glmGamPoi/issues |
| System Requirements | C++17 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | RNASeq, Regression, SingleCell, Software |
| Package Short Url | https://bioconductor.org/packages/glmGamPoi/ |
Citation
From within R, enter citation("glmGamPoi"):
Constantin Ahlmann-Eltze. glmGamPoi: Fit a Gamma-Poisson Generalized Linear Model. doi:10.18129/B9.bioc.glmGamPoi, R package version 1.25.1, https://bioconductor.org/packages/glmGamPoi.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | glmGamPoi_1.25.1.tar.gz |
| Windows binary (x86_64) | glmGamPoi_1.25.1.zip |
| macOS binary (arm64) | glmGamPoi_1.25.1.tgz |
| macOS binary (x86_64) | glmGamPoi_1.25.1.tgz |
Dependencies
Depends: R (>= 4.1.0)
Imports: Rcpp, beachmat, DelayedMatrixStats, matrixStats, MatrixGenerics, SparseArray (>= 1.5.21), S4Vectors, DelayedArray, HDF5Array, Matrix, SummarizedExperiment, SingleCellExperiment, BiocGenerics, methods, stats, utils, splines, rlang, vctrs
LinkingTo: Rcpp, RcppArmadillo, beachmat, assorthead
Suggests: testthat (>= 2.1.0), zoo, DESeq2, edgeR, limma, MASS, statmod, ggplot2, bench, BiocParallel, knitr, rmarkdown, BiocStyle, TENxPBMCData, muscData, scran, dplyr
Reverse dependencies
Imports Me (4): BASiCStan, DOtools, lemur, transformGamPoi
Suggests Me (7): DESeq2, DEXSeq, fishash, scregclust, scTypeEval, Seurat, singIST