infinityFlow

DOI: 10.18129/B9.bioc.infinityFlow    

This is the development version of infinityFlow; to use it, please install the devel version of Bioconductor.

Augmenting Massively Parallel Cytometry Experiments Using Multivariate Non-Linear Regressions

Bioconductor version: Development (3.12)

Pipeline to analyze and merge data files produced by BioLegend's LEGENDScreen or BD Human Cell Surface Marker Screening Panel (BD Lyoplates).

Author: Etienne Becht [cre, aut]

Maintainer: Etienne Becht <etienne.becht at protonmail.com>

Citation (from within R, enter citation("infinityFlow")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("infinityFlow")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("infinityFlow")

 

HTML R Script Basic usage of the infinityFlow package
HTML R Script Training non default regression models
PDF   Reference Manual

Details

biocViews CellBasedAssays, FlowCytometry, Proteomics, SingleCell, Software
Version 0.99.12
In Bioconductor since BioC 3.12 (R-4.0)
License GPL-3
Depends R (>= 4.0.0), flowCore
Imports stats, grDevices, utils, graphics, pbapply, matlab, png, raster, grid, uwot, gtools, Biobase, generics, parallel, methods, xgboost
LinkingTo
Suggests knitr, rmarkdown, keras, tensorflow, glmnetUtils, e1071
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package infinityFlow_0.99.12.tar.gz
Windows Binary infinityFlow_0.99.12.zip
macOS 10.13 (High Sierra) infinityFlow_0.99.12.tgz
Source Repository git clone https://git.bioconductor.org/packages/infinityFlow
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/infinityFlow
Package Short Url https://bioconductor.org/packages/infinityFlow/
Package Downloads Report Download Stats

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