infinityFlow
This is the development version of infinityFlow; for the stable release version, see infinityFlow.
Augmenting Massively Parallel Cytometry Experiments Using Multivariate Non-Linear Regressions
Bioconductor version: Development (3.20)
Pipeline to analyze and merge data files produced by BioLegend's LEGENDScreen or BD Human Cell Surface Marker Screening Panel (BD Lyoplates).
Author: Etienne Becht [cre, aut]
Maintainer: Etienne Becht <etienne.becht at protonmail.com>
Citation (from within R, enter
citation("infinityFlow")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("infinityFlow")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("infinityFlow")
Basic usage of the infinityFlow package | HTML | R Script |
Training non default regression models | HTML | R Script |
Reference Manual |
Details
biocViews | CellBasedAssays, FlowCytometry, Proteomics, SingleCell, Software |
Version | 1.15.0 |
In Bioconductor since | BioC 3.12 (R-4.0) (4 years) |
License | GPL-3 |
Depends | R (>= 4.0.0), flowCore |
Imports | stats, grDevices, utils, graphics, pbapply, matlab, png, raster, grid, uwot, gtools, Biobase, generics, parallel, methods, xgboost |
System Requirements | |
URL |
See More
Suggests | knitr, rmarkdown, keras, tensorflow, glmnetUtils, e1071 |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | infinityFlow_1.15.0.tar.gz |
Windows Binary | infinityFlow_1.15.0.zip |
macOS Binary (x86_64) | infinityFlow_1.15.0.tgz |
macOS Binary (arm64) | infinityFlow_1.15.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/infinityFlow |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/infinityFlow |
Bioc Package Browser | https://code.bioconductor.org/browse/infinityFlow/ |
Package Short Url | https://bioconductor.org/packages/infinityFlow/ |
Package Downloads Report | Download Stats |