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infinityFlow

This is the development version of infinityFlow; for the stable release version, see infinityFlow.

Augmenting Massively Parallel Cytometry Experiments Using Multivariate Non-Linear Regressions


Bioconductor version: Development (3.19)

Pipeline to analyze and merge data files produced by BioLegend's LEGENDScreen or BD Human Cell Surface Marker Screening Panel (BD Lyoplates).

Author: Etienne Becht [cre, aut]

Maintainer: Etienne Becht <etienne.becht at protonmail.com>

Citation (from within R, enter citation("infinityFlow")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("infinityFlow")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("infinityFlow")
Basic usage of the infinityFlow package HTML R Script
Training non default regression models HTML R Script
Reference Manual PDF

Details

biocViews CellBasedAssays, FlowCytometry, Proteomics, SingleCell, Software
Version 1.13.1
In Bioconductor since BioC 3.12 (R-4.0) (3.5 years)
License GPL-3
Depends R (>= 4.0.0), flowCore
Imports stats, grDevices, utils, graphics, pbapply, matlab, png, raster, grid, uwot, gtools, Biobase, generics, parallel, methods, xgboost
System Requirements
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Suggests knitr, rmarkdown, keras, tensorflow, glmnetUtils, e1071
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package infinityFlow_1.13.1.tar.gz
Windows Binary infinityFlow_1.13.1.zip
macOS Binary (x86_64) infinityFlow_1.13.1.tgz
macOS Binary (arm64) infinityFlow_1.13.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/infinityFlow
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/infinityFlow
Bioc Package Browser https://code.bioconductor.org/browse/infinityFlow/
Package Short Url https://bioconductor.org/packages/infinityFlow/
Package Downloads Report Download Stats