maser

DOI: 10.18129/B9.bioc.maser    

This is the development version of maser; for the stable release version, see maser.

Mapping Alternative Splicing Events to pRoteins

Bioconductor version: Development (3.11)

This package provides functionalities for downstream analysis, annotation and visualizaton of alternative splicing events generated by rMATS.

Author: Diogo F.T. Veiga [aut, cre]

Maintainer: Diogo F.T. Veiga <diogof.veiga at gmail.com>

Citation (from within R, enter citation("maser")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("maser")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("maser")

 

HTML R Script Introduction
HTML R Script Mapping protein features to splicing events
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews AlternativeSplicing, Software, Transcriptomics, Visualization
Version 1.5.0
In Bioconductor since BioC 3.8 (R-3.5) (1 year)
License MIT + file LICENSE
Depends R (>= 3.5.0), ggplot2, GenomicRanges
Imports dplyr, rtracklayer, reshape2, Gviz, DT, GenomeInfoDb, stats, utils, IRanges, methods, BiocGenerics, parallel, data.table
LinkingTo
Suggests testthat, knitr, rmarkdown, BiocStyle, AnnotationHub
SystemRequirements
Enhances
URL https://github.com/DiogoVeiga/maser
BugReports https://github.com/DiogoVeiga/maser/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package maser_1.5.0.tar.gz
Windows Binary maser_1.5.0.zip
Mac OS X 10.11 (El Capitan) maser_1.5.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/maser
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/maser
Package Short Url https://bioconductor.org/packages/maser/
Package Downloads Report Download Stats

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