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This is the development version of plyinteractions; for the stable release version, see plyinteractions.

Extending tidy verbs to genomic interactions

Bioconductor version: Development (3.19)

Operate on `GInteractions` objects as tabular data using `dplyr`-like verbs. The functions and methods in `plyinteractions` provide a grammatical approach to manipulate `GInteractions`, to facilitate their integration in genomic analysis workflows.

Author: Jacques Serizay [aut, cre]

Maintainer: Jacques Serizay <jacquesserizay at gmail.com>

Citation (from within R, enter citation("plyinteractions")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

HiCarithmetic HTML R Script
plyinteractions HTML R Script
Reference Manual PDF


biocViews Infrastructure, Software
Version 1.1.0
In Bioconductor since BioC 3.18 (R-4.3) (< 6 months)
License Artistic-2.0
Depends R (>= 4.3.0)
Imports InteractionSet, GenomeInfoDb, BiocGenerics, GenomicRanges, plyranges, IRanges, S4Vectors, rlang, dplyr, tibble, tidyselect, methods, utils
System Requirements
URL https://github.com/js2264/plyinteractions
Bug Reports https://github.com/js2264/plyinteractions/issues
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Suggests tidyverse, BSgenome.Mmusculus.UCSC.mm10, Biostrings, BiocParallel, scales, HiContactsData, rtracklayer, BiocStyle, covr, knitr, rmarkdown, sessioninfo, testthat (>= 3.0.0), RefManageR
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Follow Installation instructions to use this package in your R session.

Source Package plyinteractions_1.1.0.tar.gz
Windows Binary plyinteractions_1.1.0.zip
macOS Binary (x86_64) plyinteractions_1.1.0.tgz
macOS Binary (arm64) plyinteractions_1.1.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/plyinteractions
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/plyinteractions
Bioc Package Browser https://code.bioconductor.org/browse/plyinteractions/
Package Short Url https://bioconductor.org/packages/plyinteractions/
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