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proteasy

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of proteasy; for the stable release version, see proteasy.

Protease Mapping


Bioconductor version: Development (3.19)

Retrieval of experimentally derived protease- and cleavage data derived from the MEROPS database. Proteasy contains functions for mapping peptide termini to known sites where a protease cleaves. This package also makes it possible to quickly look up known substrates based on a list of (potential) proteases, or vice versa - look up proteases based on a list of substrates.

Author: Martin Rydén [aut, cre]

Maintainer: Martin Rydén <martin.ryden at med.lu.se>

Citation (from within R, enter citation("proteasy")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("proteasy")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews BiomedicalInformatics, FunctionalGenomics, Proteomics, Software
Version 1.5.1
In Bioconductor since BioC 3.16 (R-4.2) (1.5 years)
License GPL-3
Depends R (>= 4.2.0)
Imports data.table, stringr, ensembldb, AnnotationFilter, EnsDb.Hsapiens.v86, EnsDb.Mmusculus.v79, EnsDb.Rnorvegicus.v79, Rcpi, methods, utils
System Requirements
URL https://github.com/martinry/proteasy
Bug Reports https://github.com/martinry/proteasy/issues
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Suggests BiocStyle, knitr, rmarkdown, igraph, ComplexHeatmap, viridis
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary proteasy_1.5.1.zip (64-bit only)
macOS Binary (x86_64) proteasy_1.5.1.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/proteasy
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/proteasy
Package Short Url https://bioconductor.org/packages/proteasy/
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