qPLEXanalyzer

DOI: 10.18129/B9.bioc.qPLEXanalyzer    

This is the development version of qPLEXanalyzer; for the stable release version, see qPLEXanalyzer.

Tools for qPLEX-RIME data analysis

Bioconductor version: Development (3.12)

Tools for quantitative proteomics data analysis generated from qPLEX-RIME method.

Author: Matthew Eldridge [aut], Kamal Kishore [aut], Ashley Sawle [aut, cre]

Maintainer: Ashley Sawle <ads2202cu at gmail.com>

Citation (from within R, enter citation("qPLEXanalyzer")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("qPLEXanalyzer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("qPLEXanalyzer")

 

HTML R Script qPLEXanalyzer
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, ImmunoOncology, MassSpectrometry, Normalization, Preprocessing, Proteomics, QualityControl, Software
Version 1.7.3
In Bioconductor since BioC 3.8 (R-3.5) (2 years)
License GPL-2
Depends R (>= 4.0), Biobase, MSnbase
Imports assertthat, BiocGenerics, Biostrings, dplyr (>= 1.0.0), ggdendro, ggplot2, graphics, grDevices, IRanges, limma, magrittr, preprocessCore, purrr, RColorBrewer, readr, rlang, scales, stats, stringr, tibble, tidyr, tidyselect, utils
LinkingTo
Suggests gridExtra, knitr, qPLEXdata, testthat, UniProt.ws, vdiffr
SystemRequirements
Enhances
URL
BugReports https://github.com/crukci-bioinformatics/qPLEXanalyzer/issues
Depends On Me qPLEXdata
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package qPLEXanalyzer_1.7.3.tar.gz
Windows Binary qPLEXanalyzer_1.7.3.zip
macOS 10.13 (High Sierra) qPLEXanalyzer_1.7.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/qPLEXanalyzer
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/qPLEXanalyzer
Package Short Url https://bioconductor.org/packages/qPLEXanalyzer/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: