traseR
GWAS trait-associated SNP enrichment analyses in genomic intervals
Bioconductor version: 3.24 · Package version: 1.43.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
traseR performs GWAS trait-associated SNP enrichment analyses in genomic intervals using different hypothesis testing approaches, also provides various functionalities to explore and visualize the results.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("traseR")Details
| Maintainer | li chen<li.chen@emory.edu> |
| Author | Li Chen, Zhaohui S.Qin |
| License | GPL |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Alignment, Coverage, DataImport, Genetics, QualityControl, Sequencing, Software |
| Package Short Url | https://bioconductor.org/packages/traseR/ |
Citation
From within R, enter citation("traseR"):
Li Chen, Zhaohui S.Qin. traseR: GWAS trait-associated SNP enrichment analyses in genomic intervals. doi:10.18129/B9.bioc.traseR, R package version 1.43.0, https://bioconductor.org/packages/traseR.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | traseR_1.43.0.tar.gz |
| Windows binary (x86_64) | traseR_1.43.0.zip |
| macOS binary (arm64) | traseR_1.43.0.tgz |
| macOS binary (x86_64) | traseR_1.43.0.tgz |
Dependencies
Depends: R (>= 3.5.0), GenomicRanges, IRanges, BSgenome.Hsapiens.UCSC.hg19
Suggests: BiocStyle, RUnit, BiocGenerics