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This is the development version of; for the stable release version, see

Input data for the geneplast package via AnnotationHub

Bioconductor version: Development (3.20)

The package provides datasets from different sources via AnnotationHub to use in geneplast pipelines. The datasets have species, phylogenetic trees, and orthology relationships among eukaryotes from different orthologs databases.

Author: Leonardo Campos [aut, cre], Danilo Imparato [aut], Rodrigo Dalmolin [aut], Mauro Castro [aut]

Maintainer: Leonardo Campos <leofields at>

Citation (from within R, enter citation("")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Supporting data for geneplast evolutionary analyses HTML R Script
Reference Manual PDF


biocViews AnnotationData, AnnotationHub, GeneRegulation, Genetics, SystemsBiology
Version 0.99.9
License Artistic-2.0
Depends R (>= 4.0)
Imports ape, treeio, tibble, tidyr, dplyr, readr, purrr, igraph, geneplast, BiocFileCache
System Requirements
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Suggests geneplast, BiocGenerics, BiocStyle, knitr, rmarkdown
Linking To
Depends On Me
Imports Me
Suggests Me geneplast
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Follow Installation instructions to use this package in your R session.

Source Package geneplast.data_0.99.9.tar.gz
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