minet
This is the released version of minet; for the devel version, see minet.
Mutual Information NETworks
Bioconductor version: Release (3.23)
This package implements various algorithms for inferring mutual information networks from data.
Author: Patrick E. Meyer, Frederic Lafitte, Gianluca Bontempi
Maintainer: Patrick E. Meyer <software at meyerp.com>
citation("minet")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("minet")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | GraphAndNetwork, Microarray, Network, NetworkInference, Software |
| Version | 3.70.0 |
| In Bioconductor since | BioC 2.3 (R-2.8) (18 years) |
| License | Artistic-2.0 |
| Depends | |
| Imports | infotheo |
| System Requirements | |
| URL | http://minet.meyerp.com |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | BUS, geNetClassifier, netresponse |
| Imports Me | BioNERO, epiNEM, RTN, PRANA, TGS |
| Suggests Me | CNORfeeder, TCGAbiolinks, WGCNA |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | minet_3.70.0.tar.gz |
| Windows Binary (x86_64) | minet_3.70.0.zip |
| macOS Binary (big-sur-x86_64) | minet_3.70.0.tgz |
| macOS Binary (sonoma-arm64) | minet_3.70.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/minet |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/minet |
| Bioc Package Browser | https://code.bioconductor.org/browse/minet/ |
| Package Short Url | https://bioconductor.org/packages/minet/ |
| Package Downloads Report | Download Stats |