CCPlotR

DOI: 10.18129/B9.bioc.CCPlotR  

Plots For Visualising Cell-Cell Interactions

Bioconductor version: Release (3.18)

CCPlotR is an R package for visualising results from tools that predict cell-cell interactions from single-cell RNA-seq data. These plots are generic and can be used to visualise results from multiple tools such as Liana, CellPhoneDB, NATMI etc.

Author: Sarah Ennis [aut, cre] , Pilib Ó Broin [aut], Eva Szegezdi [aut]

Maintainer: Sarah Ennis <ennissarah94 at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CCPlotR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CCPlotR")

 

HTML	R Script	User Guide
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	CellBiology, Network, SingleCell, Software, SystemsBiology, Visualization
Version	1.0.0
In Bioconductor since	BioC 3.18 (R-4.3) (< 6 months)
License	MIT + file LICENSE
Depends
Imports	plyr, tidyr, dplyr, ggplot2, forcats, ggraph, igraph, scatterpie, circlize, ComplexHeatmap, tibble, grid, ggbump, stringr, ggtext, ggh4x, patchwork, RColorBrewer, scales, viridis, grDevices, graphics, stats, methods
LinkingTo
Suggests	knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0)
SystemRequirements
Enhances
URL	https://github.com/Sarah145/CCPlotR
BugReports	https://github.com/Sarah145/CCPlotR/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CCPlotR_1.0.0.tar.gz
Windows Binary	CCPlotR_1.0.0.zip
macOS Binary (x86_64)	CCPlotR_1.0.0.tgz
macOS Binary (arm64)	CCPlotR_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CCPlotR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CCPlotR
Bioc Package Browser	https://code.bioconductor.org/browse/CCPlotR/
Package Short Url	https://bioconductor.org/packages/CCPlotR/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.18	Source Archive