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ComplexHeatmap

Make Complex Heatmaps


Bioconductor version: Release (3.18)

Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential patterns. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports various annotation graphics.

Author: Zuguang Gu [aut, cre]

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Citation (from within R, enter citation("ComplexHeatmap")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ComplexHeatmap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ComplexHeatmap")
complex_heatmap.html HTML
Most probably asked questions HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews Sequencing, Software, Visualization
Version 2.18.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License MIT + file LICENSE
Depends R (>= 3.5.0), methods, grid, graphics, stats, grDevices
Imports circlize (>= 0.4.14), GetoptLong, colorspace, clue, RColorBrewer, GlobalOptions (>= 0.1.0), png, digest, IRanges, matrixStats, foreach, doParallel, codetools
System Requirements
URL https://github.com/jokergoo/ComplexHeatmap https://jokergoo.github.io/ComplexHeatmap-reference/book/
See More
Suggests testthat (>= 1.0.0), knitr, markdown, dendsort, jpeg, tiff, fastcluster, EnrichedHeatmap, dendextend (>= 1.0.1), grImport, grImport2, glue, GenomicRanges, gridtext, pheatmap (>= 1.0.12), gridGraphics, gplots, rmarkdown, Cairo, magick
Linking To
Enhances
Depends On Me AMARETTO, EnrichedHeatmap, InteractiveComplexHeatmap, recoup, sechm
Imports Me airpart, ASURAT, BindingSiteFinder, BiocOncoTK, BioNERO, blacksheepr, BloodGen3Module, CATALYST, CCPlotR, celda, CeTF, COCOA, cola, COTAN, cytoKernel, DEGreport, DEP, diffcyt, diffUTR, ELMER, fCCAC, FLAMES, gCrisprTools, GeneTonic, GenomicPlot, GenomicSuperSignature, gmoviz, GRaNIE, hermes, hoodscanR, InterCellar, iSEE, LineagePulse, MatrixQCvis, MesKit, microbiomeMarker, MOMA, monaLisa, Moonlight2R, MultiRNAflow, muscat, musicatk, MWASTools, nipalsMCIA, PathoStat, PeacoQC, pipeComp, POMA, profileplyr, RLSeq, scRNAseqApp, segmenter, signifinder, simona, simplifyEnrichment, singleCellTK, sparrow, SPONGE, TBSignatureProfiler, TCGAWorkflow, Xeva, YAPSA
Suggests Me artMS, bambu, clustifyr, CNVRanger, demuxSNP, dittoSeq, EnrichmentBrowser, gtrellis, HilbertCurve, mastR, msImpute, NanoporeRNASeq, pareg, plotgardener, projectR, proteasy, QFeatures, raer, scDblFinder, SPIAT, TCGAbiolinks, TCGAutils, weitrix
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ComplexHeatmap_2.18.0.tar.gz
Windows Binary ComplexHeatmap_2.18.0.zip
macOS Binary (x86_64) ComplexHeatmap_2.18.0.tgz
macOS Binary (arm64) ComplexHeatmap_2.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ComplexHeatmap
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ComplexHeatmap
Bioc Package Browser https://code.bioconductor.org/browse/ComplexHeatmap/
Package Short Url https://bioconductor.org/packages/ComplexHeatmap/
Package Downloads Report Download Stats