DOI: 10.18129/B9.bioc.DAPAR    

Tools for the Differential Analysis of Proteins Abundance with R

Bioconductor version: Release (3.15)

This package contains a collection of functions for the visualisation and the statistical analysis of proteomic data.

Author: Samuel Wieczorek [aut, cre], Florence Combes [aut], Thomas Burger [aut], Vasile-Cosmin Lazar [ctb], Enora Fremy [ctb], Helene Borges [ctb]

Maintainer: Samuel Wieczorek <samuel.wieczorek at cea.fr>

Citation (from within R, enter citation("DAPAR")):


To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script Prostar user manual
PDF   Reference Manual
Text   NEWS


biocViews DataImport, GO, MassSpectrometry, Normalization, Preprocessing, Proteomics, QualityControl, Software
Version 1.28.1
In Bioconductor since BioC 3.2 (R-3.2) (6.5 years)
License Artistic-2.0
Depends R (>= 4.1.0)
Imports Biobase, MSnbase, tibble, RColorBrewer, stats, preprocessCore, Cairo, png, lattice, reshape2, gplots, pcaMethods, ggplot2, limma, knitr, tmvtnorm, norm, impute, stringr, grDevices, graphics, utils, cp4p (>= 0.3.5), scales, Matrix, imp4p (>= 1.1), methods, DAPARdata(>= 1.23.4), siggenes, graph, lme4, highcharter, dplyr, tidyr, tidyverse, igraph
Suggests BiocGenerics, testthat, BiocStyle, AnnotationDbi, clusterProfiler, diptest, cluster, vioplot, visNetwork, vsn, igraph, FactoMineR, factoextra, dendextend, foreach, parallel, doParallel, Mfuzz, apcluster, forcats, readxl, openxlsx, multcomp, purrr
URL http://www.prostar-proteomics.org/
BugReports https://github.com/samWieczorek/DAPAR/issues
Depends On Me
Imports Me Prostar
Suggests Me DAPARdata
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DAPAR_1.28.1.tar.gz
Windows Binary DAPAR_1.28.1.zip
macOS 10.13 (High Sierra) DAPAR_1.28.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/DAPAR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DAPAR
Package Short Url https://bioconductor.org/packages/DAPAR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.15 Source Archive

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