DOI: 10.18129/B9.bioc.DAPAR    

This is the development version of DAPAR; for the stable release version, see DAPAR.

Tools for the Differential Analysis of Proteins Abundance with R

Bioconductor version: Development (3.8)

This package contains a collection of functions for the visualisation and the statistical analysis of proteomic data.

Author: Samuel Wieczorek [cre,aut], Florence Combes [aut], Thomas Burger [aut], Cosmin Lazar [ctb], Alexia Dorffer [ctb]

Maintainer: Samuel Wieczorek <samuel.wieczorek at cea.fr>

Citation (from within R, enter citation("DAPAR")):


To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly=TRUE))
BiocManager::install("DAPAR", version = "devel")


To view documentation for the version of this package installed in your system, start R and enter:



PDF DAPAR One Page Introduction
PDF R Script Prostar user manual
PDF   Reference Manual
Text   NEWS


biocViews DataImport, GO, MassSpectrometry, Normalization, Preprocessing, Proteomics, QualityControl, Software
Version 1.13.0
In Bioconductor since BioC 3.2 (R-3.2) (3 years)
License Artistic-2.0
Depends R (>= 3.5)
Imports MSnbase, RColorBrewer, stats, preprocessCore, Cairo, png, lattice, reshape2, gplots, pcaMethods, ggplot2, limma, knitr, tmvtnorm, norm, impute, doParallel, stringr, parallel, foreach, grDevices, graphics, openxlsx, utils, cp4p (>= 0.3.5), scales, Matrix, vioplot, imp4p (>= 0.5), highcharter (>= 0.5.0), DAPARdata(>= 1.9.2), siggenes, graph, lme4, readxl, clusterProfiler, dplyr, tidyr, AnnotationDbi, tidyverse, imputeLCMD
Suggests BiocGenerics, Biobase, testthat, BiocStyle, Prostar
Depends On Me
Imports Me Prostar
Suggests Me DAPARdata
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DAPAR_1.13.0.tar.gz
Windows Binary DAPAR_1.13.0.zip
Mac OS X 10.11 (El Capitan) DAPAR_1.13.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/DAPAR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DAPAR
Package Short Url http://bioconductor.org/packages/DAPAR/
Package Downloads Report Download Stats

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