DOI: 10.18129/B9.bioc.IntramiRExploreR    

Predicting Targets for Drosophila Intragenic miRNAs

Bioconductor version: Release (3.7)

Intra-miR-ExploreR, an integrative miRNA target prediction bioinformatics tool, identifies targets combining expression and biophysical interactions of a given microRNA (miR). Using the tool, we have identified targets for 92 intragenic miRs in D. melanogaster, using available microarray expression data, from Affymetrix 1 and Affymetrix2 microarray array platforms, providing a global perspective of intragenic miR targets in Drosophila. Predicted targets are grouped according to biological functions using the DAVID Gene Ontology tool and are ranked based on a biologically relevant scoring system, enabling the user to identify functionally relevant targets for a given miR.

Author: Surajit Bhattacharya and Daniel Cox

Maintainer: Surajit Bhattacharya <sbhattacharya3 at>

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biocViews GeneExpression, GenePrediction, GeneTarget, Microarray, Software, StatisticalMethod
Version 1.2.0
License GPL-2
Depends R (>= 3.4)
Imports igraph (>= 1.0.1), FGNet(>= 3.0.7), knitr (>= 1.12.3), stats, utils, grDevices, graphics
Suggests RDAVIDWebService, gProfileR, topGO, KEGGprofile,, rmarkdown, testthat
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