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Generate QC Reports For Alevin Output

Bioconductor version: Release (3.18)

Generate QC reports summarizing the output from an alevin, alevin-fry, or simpleaf run. Reports can be generated as html or pdf files, or as shiny applications.

Author: Charlotte Soneson [aut, cre] , Avi Srivastava [aut], Rob Patro [aut], Dongze He [aut]

Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>

Citation (from within R, enter citation("alevinQC")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

alevinQC HTML R Script
Reference Manual PDF


biocViews QualityControl, SingleCell, Software
Version 1.18.0
In Bioconductor since BioC 3.9 (R-3.6) (5 years)
License MIT + file LICENSE
Depends R (>= 4.0)
Imports rmarkdown (>= 2.5), tools, methods, ggplot2 (>= 3.4.0), GGally, dplyr, rjson, shiny, shinydashboard, DT, stats, utils, tximport(>= 1.17.4), cowplot, rlang, Rcpp
System Requirements C++11
URL https://github.com/csoneson/alevinQC
Bug Reports https://github.com/csoneson/alevinQC/issues
See More
Suggests knitr, BiocStyle, testthat (>= 3.0.0), BiocManager
Linking To Rcpp
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package alevinQC_1.18.0.tar.gz
Windows Binary alevinQC_1.18.0.zip (64-bit only)
macOS Binary (x86_64) alevinQC_1.18.0.tgz
macOS Binary (arm64) alevinQC_1.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/alevinQC
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/alevinQC
Bioc Package Browser https://code.bioconductor.org/browse/alevinQC/
Package Short Url https://bioconductor.org/packages/alevinQC/
Package Downloads Report Download Stats