Welcome to the new bioconductor.org!


Gene-Specific Phenotype EstimatoR

Bioconductor version: Release (3.18)

Estimates gene-specific phenotypes from off-target confounded RNAi screens. The phenotype of each siRNA is modeled based on on-targeted and off-targeted genes, using a regularized linear regression model.

Author: Fabian Schmich

Maintainer: Fabian Schmich <fabian.schmich at bsse.ethz.ch>

Citation (from within R, enter citation("gespeR")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

An R package for deconvoluting off-target confounded RNAi screens PDF R Script
Reference Manual PDF


biocViews CellBasedAssays, GeneTarget, ImmunoOncology, Preprocessing, Regression, Software, Visualization
Version 1.34.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License GPL-3
Depends methods, graphics, ggplot2, R (>= 2.10)
Imports Matrix, glmnet, cellHTS2, Biobase, biomaRt, doParallel, parallel, foreach, reshape2, dplyr
System Requirements
URL http://www.cbg.ethz.ch/software/gespeR
See More
Suggests knitr
Linking To
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package gespeR_1.34.0.tar.gz
Windows Binary gespeR_1.34.0.zip
macOS Binary (x86_64) gespeR_1.34.0.tgz
macOS Binary (arm64) gespeR_1.34.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/gespeR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/gespeR
Bioc Package Browser https://code.bioconductor.org/browse/gespeR/
Package Short Url https://bioconductor.org/packages/gespeR/
Package Downloads Report Download Stats