ggsc
Visualizing Single Cell Data
Bioconductor version: Release (3.18)
Useful functions to visualize single cell and spatial data. It supports both 'SingleCellExperiment' and 'Seurat' objects. It also supports visualizing the data using grammar of graphics implemented in 'ggplot2'.
Author: Guangchuang Yu [aut, cre, cph] 
, Shuangbin Xu [aut]
Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>
Citation (from within R, enter
citation("ggsc")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ggsc")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ggsc")| Visualizing single cell data | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DimensionReduction, GeneExpression, SingleCell, Software, Spatial, Transcriptomics, Visualization |
| Version | 1.0.2 |
| In Bioconductor since | BioC 3.18 (R-4.3) (0.5 years) |
| License | Artistic-2.0 |
| Depends | |
| Imports | Rcpp, RcppParallel, cli, dplyr, ggplot2, grDevices, grid, methods, rlang, scattermore, stats, Seurat, SingleCellExperiment, SummarizedExperiment, tidydr, tidyr, tibble, utils, yulab.utils |
| System Requirements | |
| URL | https://github.com/YuLab-SMU/ggsc |
| Bug Reports | https://github.com/YuLab-SMU/ggsc/issues |
See More
| Suggests | aplot, BiocParallel, forcats, ggforce, ggnewscale, igraph, knitr, ks, Matrix, prettydoc, rmarkdown, scran, scater, scuttle, shadowtext, sf, SeuratObject, SpatialExperiment, STexampleData, testthat (>= 3.0.0) |
| Linking To | Rcpp, RcppArmadillo, RcppParallel |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ggsc_1.0.2.tar.gz |
| Windows Binary | ggsc_1.0.2.zip |
| macOS Binary (x86_64) | ggsc_1.0.2.tgz |
| macOS Binary (arm64) | ggsc_1.0.2.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ggsc |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ggsc |
| Bioc Package Browser | https://code.bioconductor.org/browse/ggsc/ |
| Package Short Url | https://bioconductor.org/packages/ggsc/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.18 | Source Archive |