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Bioconductor version: Release (3.18)
An R package for deeping mining gene co-expression networks in multi-trait expression data. Provides functions for analyzing, comparing, and visualizing WGCNA networks across conditions. multiWGCNA was designed to handle the common case where there are multiple biologically meaningful sample traits, such as disease vs wildtype across development or anatomical region.
Author: Dario Tommasini [aut, cre] , Brent Fogel [aut, ctb]
Maintainer: Dario Tommasini <dtommasini0 at gmail.com>
Citation (from within R,
enter citation("multiWGCNA")
):
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("multiWGCNA")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("multiWGCNA")
HTML | R Script | Astrocyte multiWGCNA network |
HTML | R Script | General Workflow |
Reference Manual | ||
Text | NEWS |
biocViews | Clustering, DifferentialExpression, GeneExpression, RNASeq, Regression, Sequencing, Software |
Version | 1.0.0 |
In Bioconductor since | BioC 3.18 (R-4.3) (< 6 months) |
License | GPL-3 |
Depends | R (>= 4.3.0), ggalluvial |
Imports | stringr, readr, WGCNA, dplyr, reshape2, data.table, patchwork, scales, igraph, flashClust, ggplot2, dcanr, cowplot, ggrepel, methods, SummarizedExperiment |
LinkingTo | |
Suggests | BiocStyle, doParallel, ExperimentHub, knitr, markdown, rmarkdown, testthat (>= 3.0.0), vegan |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | multiWGCNAdata |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | multiWGCNA_1.0.0.tar.gz |
Windows Binary | multiWGCNA_1.0.0.zip |
macOS Binary (x86_64) | multiWGCNA_1.0.0.tgz |
macOS Binary (arm64) | multiWGCNA_1.0.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/multiWGCNA |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/multiWGCNA |
Bioc Package Browser | https://code.bioconductor.org/browse/multiWGCNA/ |
Package Short Url | https://bioconductor.org/packages/multiWGCNA/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.18 | Source Archive |
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