To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ChIPseqR")

In most cases, you don't need to download the package archive at all.

ChIPseqR

 

   

This is the development version of ChIPseqR; for the stable release version, see ChIPseqR.

Identifying Protein Binding Sites in High-Throughput Sequencing Data

Bioconductor version: Development (3.4)

ChIPseqR identifies protein binding sites from ChIP-seq and nucleosome positioning experiments. The model used to describe binding events was developed to locate nucleosomes but should flexible enough to handle other types of experiments as well.

Author: Peter Humburg

Maintainer: Peter Humburg <peter.humburg at gmail.com>

Citation (from within R, enter citation("ChIPseqR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ChIPseqR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ChIPseqR")

 

PDF R Script Introduction to ChIPseqR
PDF   Reference Manual

Details

biocViews ChIPSeq, Infrastructure, Software
Version 1.27.0
In Bioconductor since BioC 2.5 (R-2.10) (6.5 years)
License GPL (>= 2)
Depends R (>= 2.10.0), methods, BiocGenerics, S4Vectors(>= 0.9.25)
Imports Biostrings, fBasics, GenomicRanges, IRanges(>= 2.5.14), graphics, grDevices, HilbertVis, ShortRead, stats, timsac, utils
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ChIPseqR_1.27.0.tar.gz
Windows Binary ChIPseqR_1.27.0.zip (32- & 64-bit)
Mac OS X 10.9 (Mavericks) ChIPseqR_1.27.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/ChIPseqR
Package Short Url http://bioconductor.org/packages/ChIPseqR/
Package Downloads Report Download Stats

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