Tools for variant data

Bioconductor version: Development (3.0)

An interface to the fast-access storage format for VCF data provided in SeqArray, with tools for common operations and analysis.

Author: Stephanie M. Gogarten, Xiuwen Zheng

Maintainer: Stephanie M. Gogarten <sdmorris at>, Xiuwen Zheng <zhengx at>

To install this package, start R and enter:


Citation (from within R, enter citation("SeqVarTools")):


PDF R Script Introduction to SeqVarTools
PDF   Reference Manual


biocViews GeneticVariability, Genetics, SNP, Sequencing, Software
Version 1.3.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL-3
Depends SeqArray(>= 1.1.1)
Imports methods, GenomicRanges, IRanges, GWASExactHW
Suggests BiocGenerics, RUnit
System Requirements
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source SeqVarTools_1.3.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) SeqVarTools_1.3.0.tgz
Mac OS X 10.9 (Mavericks) SeqVarTools_1.3.0.tgz
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