XVector

Representation and manpulation of external sequences

Bioconductor version: Development (3.0)

Memory efficient S4 classes for storing sequences "externally" (behind an R external pointer, or on disk).

Author: H. Pages and P. Aboyoun

Maintainer: H. Pages <hpages at fhcrc.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("XVector")

To cite this package in a publication, start R and enter:

    citation("XVector")

Documentation

PDF   Reference Manual

Details

biocViews DataRepresentation, Infrastructure, Software
Version 0.5.3
In Bioconductor since BioC 2.13 (R-3.0)
License Artistic-2.0
Depends R (>= 2.8.0), methods, BiocGenerics(>= 0.7.2), S4Vectors(>= 0.0.1), IRanges(>= 1.99.1)
Imports methods, BiocGenerics, S4Vectors, IRanges
Suggests Biostrings, drosophila2probe, RUnit
System Requirements
URL
Depends On Me Biostrings, motifRG, Rsamtools, rSFFreader, triplex
Imports Me Biostrings, BSgenome, ChIPsim, CNEr, DECIPHER, gcrma, GenomicRanges, Gviz, motifRG, R453Plus1Toolbox, rSFFreader, rtracklayer, TFBSTools, VariantAnnotation
Suggests Me IRanges

Package Downloads

Package Source XVector_0.5.3.tar.gz
Windows Binary XVector_0.5.3.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) XVector_0.5.3.tgz
Mac OS X 10.9 (Mavericks)
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