To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CNEr")

In most cases, you don't need to download the package archive at all.

CNEr

 

   

This is the development version of CNEr; for the stable release version, see CNEr.

CNE Detection and Visualization

Bioconductor version: Development (3.3)

Large-scale identification and advanced visualization of sets of conserved noncoding elements.

Author: Ge Tan <ge.tan09 at imperial.ac.uk>

Maintainer: Ge Tan <ge.tan09 at imperial.ac.uk>

Citation (from within R, enter citation("CNEr")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CNEr")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNEr")

 

HTML CNE identification and visualisation
HTML Pairwise whole genome alignment
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews DataImport, GeneRegulation, Software, Visualization
Version 1.7.13
In Bioconductor since BioC 2.14 (R-3.1) (2 years)
License GPL-2 | file LICENSE
Depends R (>= 3.2.2)
Imports Biostrings(>= 2.33.4), RSQLite (>= 0.11.4), GenomeInfoDb(>= 1.1.3), GenomicRanges(>= 1.23.16), rtracklayer(>= 1.25.5), XVector(>= 0.5.4), DBI (>= 0.2-7), GenomicAlignments(>= 1.1.9), methods, S4Vectors(>= 0.9.25), IRanges(>= 2.5.27), readr (>= 0.2.2), BiocGenerics, tools, parallel
LinkingTo S4Vectors, IRanges, XVector
Suggests Gviz(>= 1.7.4), BiocStyle, knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL https://github.com/ge11232002/CNEr
BugReports https://github.com/ge11232002/CNEr/issues
Depends On Me
Imports Me TFBSTools
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source CNEr_1.7.13.tar.gz
Windows Binary CNEr_1.7.13.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) CNEr_1.5.4.tgz
Mac OS X 10.9 (Mavericks) CNEr_1.7.13.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/CNEr
Package Short Url http://bioconductor.org/packages/CNEr/
Package Downloads Report Download Stats

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