biocGraph

Graph examples and use cases in Bioinformatics

Bioconductor version: Development (3.0)

This package provides examples and code that make use of the different graph related packages produced by Bioconductor.

Author: Li Long <li.long at isb-sib.ch>, Robert Gentleman <rgentlem at fhcrc.org>, Seth Falcon <sethf at fhcrc.org> Florian Hahne <fhahne at fhcrc.org>

Maintainer: Florian Hahne <florian.hahne at novartis.com>

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("biocGraph")

Citation (from within R, enter citation("biocGraph")):

Documentation

PDF R Script Examples of plotting graphs Using Rgraphviz
PDF R Script HOWTO layout pathways
PDF   Reference Manual

Details

biocViews GraphAndNetwork, Software, Visualization
Version 1.27.0
In Bioconductor since BioC 2.1 (R-2.6)
License Artistic-2.0
Depends Rgraphviz, graph
Imports Rgraphviz, geneplotter, graph, BiocGenerics, methods
Suggests fibroEset, geneplotter, hgu95av2.db
System Requirements
URL
Depends On Me
Imports Me
Suggests Me BiocCaseStudies

Package Downloads

Package Source biocGraph_1.27.0.tar.gz
Windows Binary biocGraph_1.27.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) biocGraph_1.27.0.tgz
Mac OS X 10.9 (Mavericks) biocGraph_1.27.0.tgz
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