epivizr

R Interface to epiviz web app

Bioconductor version: Development (3.0)

This package provides Websocket communication to the epiviz web app (http://epiviz.cbcb.umd.edu) for interactive visualization of genomic data. Objects in R/bioc interactive sessions can be displayed in genome browser tracks or plots to be explored by navigation through genomic regions. Fundamental Bioconductor data structures are supported (e.g., GenomicRanges and SummarizedExperiment objects), while providing an easy mechanism to support other data structures. Visualizations (using d3.js) can be easily added to the web app as well.

Author: Hector Corrada Bravo, Florin Chelaru, Llewellyn Smith, Naomi Goldstein

Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("epivizr")

To cite this package in a publication, start R and enter:

    citation("epivizr")

Documentation

HTML R Script Introduction to epivizr
PDF   Reference Manual

Details

biocViews GUI, Infrastructure, Software, Visualization
Version 1.3.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL-3
Depends R (>= 3.0.1), methods, Biobase, GenomicRanges(>= 1.13.47)
Imports httpuv, rjson
Suggests testthat, roxygen2, knitr, antiProfilesData, hgu133plus2.db
System Requirements
URL
Depends On Me
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Package Downloads

Package Source epivizr_1.3.0.tar.gz
Windows Binary epivizr_1.3.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) epivizr_1.3.0.tgz
Mac OS X 10.9 (Mavericks)
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