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This is the development version of minfi; for the stable release version, see minfi.

Analyze Illumina Infinium DNA methylation arrays

Bioconductor version: Development (3.5)

Tools to analyze & visualize Illumina Infinium methylation arrays.

Author: Kasper Daniel Hansen [cre, aut], Martin Aryee [aut], Rafael A. Irizarry [aut], Andrew E. Jaffe [ctb], Jovana Maksimovic [ctb], E. Andres Houseman [ctb], Jean-Philippe Fortin [ctb], Tim Triche [ctb], Shan V. Andrews [ctb]

Maintainer: Kasper Daniel Hansen <kasperdanielhansen at>

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PDF R Script minfi User's Guide
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biocViews DNAMethylation, DataImport, DifferentialMethylation, Epigenetics, MethylationArray, Microarray, MultiChannel, Normalization, Preprocessing, QualityControl, Software, TwoChannel
Version 1.21.0
In Bioconductor since BioC 2.9 (R-2.14) (5 years)
License Artistic-2.0
Depends methods, BiocGenerics(>= 0.15.3), Biobase(>= 2.17.8), GenomicRanges, SummarizedExperiment (>= 1.1.6), Biostrings, bumphunter(>= 1.1.9)
Imports S4Vectors, GenomeInfoDb, IRanges, beanplot, RColorBrewer, lattice, nor1mix, siggenes, limma, preprocessCore, illuminaio, matrixStats (>= 0.50.0), mclust, genefilter, nlme, reshape, MASS, quadprog, data.table, GEOquery, stats, grDevices, graphics, utils
Suggests IlluminaHumanMethylation450kmanifest (>= 0.2.0), IlluminaHumanMethylation450kanno.ilmn12.hg19 (>= 0.2.1), minfiData (>= 0.18.0), minfiDataEPIC, FlowSorted.Blood.450k (>= 1.0.1), RUnit, digest, BiocStyle, knitr, rmarkdown
Depends On Me bigmelon, ChAMP, conumee, DMRcate, ENmix, methylumi, shinyMethyl
Imports Me MEAL, MethylAid, methylumi, missMethyl, MultiDataSet, quantro, skewr
Suggests Me Harman, RnBeads
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